Search result: Catalogue data in Spring Semester 2020

Number	Title	Type	ECTS	Hours	Lecturers
Biology Bachelor
3. Year, 6. Semester
Concept Courses
529-0732-00L	Proteins and Lipids Note for BSc Biology students: Only one of the two concept courses 529-0731-00 Nucleic Acids and Carbohydrates (autumn semester) or 529-0732-00 Proteins and Lipids (spring semester) can be counted for the Bachelor's degree.	W	6 credits	3G	D. Hilvert
Abstract	An overview of the relationship between protein sequence, conformation and function.
Learning objective	Overview of the relationship between protein sequence, conformation and function.
Content	Proteins, structures and properties, (bio)synthesis of polypeptides, protein folding and design, protein engineering, chemical modification of proteins, proteomics.
Literature	General Literature: - T.E. Creighton: Proteins: Structures and Molecular Properties, 2nd Edition, H.W. Freeman and Company, New York, 1993. - C. Branden, J. Tooze , Introduction to Protein Structure, Garland Publishing, New York, 1991. - J. M. Berg, J. L. Tymoczko, L. Stryer: Biochemistry, 5th edition, H.W. Freeman and Company, New York, 2002. - G.A. Petsko, D. Ringe: Protein Structure and Function, New Science Press Ltd., London, 2004. Original Literature: Citations from the original literature relevant to the individual lectures will be assigned weekly.
551-0324-00L	Systems Biology	W	6 credits	4V	P. Picotti, M. Claassen, U. Sauer, B. Snijder, B. Wollscheid
Abstract	Introduction to experimental and computational methods of systems biology. By using baker’s yeast as a thread through the series, we focus on global methods for analysis of and interference with biological functions. Illustrative applications to other organisms will highlight medical and biotechnological aspects.
Learning objective	- obtain an overview of global analytical methods - obtain an overview of computational methods in systems biology - understand the concepts of systems biology
Content	Overview of global analytical methods (e.g. DNA arrays, proteomics, metabolomics, fluxes etc), global interference methods (siRNA, mutant libraries, synthetic lethality etc.) and imaging methods. Introduction to mass spectrometry and proteomics. Concepts of metabolism in microbes and higher cells. Systems biology of developmental processes. Concepts of mathematical modeling and applications of computational systems biology.
Lecture notes	no script
Literature	The course is not taught by a particular book, but some books are suggested for further reading: - Systems biology in Practice by Klipp, Herwig, Kowald, Wierling und Lehrach. Wiley-VCH 2005
551-0320-00L	Cellular Biochemistry (Part II)	W	3 credits	2V	Y. Barral, R. Kroschewski, A. E. Smith
Abstract	This course will focus on molecular mechanisms and concepts underlying cellular biochemistry, providing advanced insights into the structural and functional details of individual cell components, and the complex regulation of their interactions. Particular emphasis will be on the spatial and temporal integration of different molecules and signaling pathways into global cellular processes.
Learning objective	The full-year course (551-0319-00 & 551-0320-00) focuses on the molecular mechanisms and concepts underlying the biochemistry of cellular physiology, investigating how these processes are integrated to carry out highly coordinated cellular functions. The molecular characterization of complex cellular functions requires a combination of approaches such as biochemistry, but also cell biology and genetics. This course is therefore the occasion to discuss these techniques and their integration in modern cellular biochemistry. The students will be able to describe the structural and functional details of individual cell components, and the spatial and temporal regulation of their interactions. In particular, they will learn to explain how different molecules and signaling pathways can be integrated during complex and highly dynamic cellular processes such as intracellular transport, cytoskeletal rearrangements, cell motility, and cell division. In addition, they will be able to illustrate the relevance of particular signaling pathways for cellular pathologies such as cancer or during cellular infection.
Content	Spatial and temporal integration of different molecules and signaling pathways into global cellular processes, such as cell division, cell infection and cell motility. Emphasis is also put on the understanding of pathologies associated with defective cell physiology, such as cancer or during cellular infection.
Literature	Recommended supplementary literature (review articles and selected primary literature) will be provided during the course.
Prerequisites / Notice	To attend this course the students must have a solid basic knowledge in chemistry, biochemistry, cell biology and general biology. Biology students have in general already attended the first part of the "Cellular Biochemistry" concept course (551-0319-00). The course will be taught in English. In addition, the course will be based on a blended-learning scenario, where frontal lectures will be complemented with carefully chosen web-based teaching elements that students access through the ETH Moodle platform.
551-0314-00L	Microbiology (Part II)	W	3 credits	2V	W.‑D. Hardt, L. Eberl, H.‑M. Fischer, J. Piel, J. Vorholt-Zambelli
Abstract	Advanced lecture class providing a broad overview on bacterial cell structure, genetics, metabolism, symbiosis and pathogenesis.
Learning objective	This concept class will be based on common concepts and introduce to the enormous diversity among bacteria and archaea. It will cover the current research on bacterial cell structure, genetics, metabolism, symbiosis and pathogenesis.
Content	Advanced class covering the state of the research in bacterial cell structure, genetics, metabolism, symbiosis and pathogenesis.
Lecture notes	Updated handouts will be provided during the class.
Literature	Current literature references will be provided during the lectures.
Prerequisites / Notice	English
551-0326-00L	Cell Biology	W	6 credits	4V	S. Werner, M. Bordoli, W. Kovacs, M. Schäfer, U. Suter, A. Wutz
Abstract	This Course introduces principle concepts, techniques, and experimental strategies used in modern Cell Biology. Major topics include: neuron-glia interactions in health and disease; mitochondrial dynamics; stem cell biology; growth factor action in development, tissue repair and disease; cell metabolism, in particular sensing and signaling mechanisms, cell organelles, and lipid metabolism.
Learning objective	-To prepare the students for successful and efficient lab work by learning how to ask the right questions and to use the appropriate techniques in a research project. -To convey knowledge about neuron-glia interactions in health and disease. - To provide information on different types of stem cells and their function in health and disease -To provide information on growth factor signaling in development, repair and disease and on the use of growth factors or their receptors as drug targets for major human diseases -To convey knowledge on the mechanisms underlying repair of injured tissues -To provide the students with an overview of mitochondrial dynamics. -Providing an understanding of RNA processing reactions and their regulations. -To provide a comprehensive understanding of metabolic sensing mechanisms occurring in different cell types and organelles in response to glucose, hormones, oxygen, nutrients as well as lipids, and to discuss downstream signaling pathways and cellular responses. -To provide models explaining how disturbances in complex metabolic control networks and bioenergetics can lead to disease and to highlight latest experimental approaches to uncover the intricacies of metabolic control at the cellular and organismal level. -Providing the background and context that foster cross-disciplinary scientific thinking.
551-0318-00L	Immunology II	W	3 credits	2V	A. Oxenius, M. Kopf, S. R. Leibundgut, E. Slack, further lecturers
Abstract	Introduction into the cellular and molecular basis of the immune system and immune responses against diverse pathogens, tumors, transplants, and self (autoimmunity)
Learning objective	The lectures will provide a detailed understanding: - how innate and adaptive immune responses interact at the cellular and molecular level. - how the immune system recognizes and fights against pathogenic microorganisms including viruses, bacteria, and parasites. - why lymphocytes tolerate self molecules. - about function and dysfunction the intestinal immune system. - immunopathology and inflammatory diseases.
Content	The aim of lecture is to understand: > How pathogens are recognized by the innate immune system > Immune defense against various pathogens > Immunology of the skin, lung and intestines > Tumor immunology > Migration and homing of immune cells > tolerance and autoimmunity > T cell memory
Lecture notes	Presentations of the lecturers are available at the Moodle link
Literature	Recommended: Kuby Immunology (Freeman)
376-0209-00L	Molecular Disease Mechanisms	W	6 credits	4V	C. Wolfrum, H. Gahlon, M. Kopf
Abstract	In this course the mechanisms of disease development will be studied. Main topics will be: 1. Influence of environmental factors with an emphasis on inflammation and the immune response. 2. Mechanisms underlying disease progression in metabolic disorders, integrating genetic and environmental factors. 3. Mechanisms underlying disease progression in cancer, integrating genetic and environment
Learning objective	To understand the mechanisms governing disease development with a special emphasis on genetic and environmental associated components
Lecture notes	All information can be found at: https://moodle-app2.let.ethz.ch/course/view.php?id=12627 The enrollment key will be provided by email
551-0307-01L	Molecular and Structural Biology II: Molecular Machines and Cellular Assemblies D-BIOL students are obliged to take part I and part II as a two-semester course.	W	3 credits	2V	N. Ban, F. Allain, S. Jonas, M. Pilhofer
Abstract	This course on advanced topics in Molecular Biology and Biochemistry will cover the structure and function of cellular assemblies. General topics in basic biochemistry will be further developed with examples of the function of large cellular machines involved in DNA packaging, translation, virus architecture, RNA processing, cell-cell interactions, and the molecular basis of CRISPER systems.
Learning objective	Students will gain a deep understanding of large cellular assemblies and the structure-function relationships governing their function in fundamental cellular processes. The lectures throughout the course will be complemented by exercises and discussions of original research examples to provide students with a deeper understanding of the subjects and to encourage active student participation.
Content	Advanced class covering the state of the research in structural molecular biology of basic cellular processes with emphasis on the function of large cellular assemblies.
Lecture notes	Updated handouts will be provided during the class.
Literature	The lecture will be based on the latest literature. Additional suggested literature: Branden, C., and J. Tooze, Introduction to Protein Structure, 2nd ed. (1995). Garland, New York.

Block Courses Registration for Block courses is mandatory. Please register under https://www.uzh.ch/zoolmed/ssl-dir/Blockkurse_UNIETH.php. Registration period from 16.12.2019 - 06.01.2020 Please note the ETH admission criteria for the admission of ETH students to ETH block courses on the block course registration website under "allocation".
Block Courses in 1st Quarter of the Semester From 18.2.2020 to 11.3.2020
Number	Title	Type	ECTS	Hours	Lecturers
551-0342-00L	Metabolomics Number of participants limited to 15. The enrolment is done by the D-BIOL study administration.	W	6 credits	7G	N. Zamboni, U. Sauer
Abstract	The course covers all basic aspects of metabolome measurements, from sample sampling to mass spectrometry and data analysis. Participants work in groups and independently perform and interpret metabolomic experiments.
Learning objective	Performing and reporting a metabolomic experiment, understanding pro and cons of mass spectrometry based metabolomics. Knowledge of workflows and tools to assist experiment interpretation, and metabolite identification.
Content	Basics of metabolomics: workflows, sample preparation, targeted and untargeted mass spectrometry, instrumentation, separation techniques (GC, LC, CE), metabolite identification, data interpretation and integration, normalization, QCs, maintenance. Soft skills to be trained: project planning, presentation, reporting, independent working style, team work.
551-0339-00L	Molecular Mechanisms of Cell Dynamics Number of participants limited to 13. The enrolment is done by the D-BIOL study administration.	W	6 credits	7G	E. Dultz, Y. Barral, U. Kutay, M. Peter, K. Weis
Abstract	Application of current strategies to study the dynamics of complex and highly regulated cellular processes.
Learning objective	The students learn to evaluate and to apply current strategies to study the dynamics of complex and highly regulated cellular processes.
Content	During this Block-Course, the students will learn to (1) describe the important mechanisms and regulators of dynamic processes in cells, (2) perform standard lab techniques and quantitate dynamic cellular processes, (3) evaluate and compare experimental strategies and model systems, (4) independently search and critically evaluate scientific literature on a specific problem and present it in a seminar, and (5) formulate scientific concepts (preparation and presentation of a poster). Students will work in small groups in individual labs on one research project (8 full days of practical work; every group of students will stay in the same lab during the entire course). The projects are close to the actual research carried out in the participating research groups, but with a clear connection to the subject of the course.
Literature	Documentation and recommended literature (review articles and selected primary literature) will be provided during the course.
Prerequisites / Notice	This course will be taught in english.
551-1516-00L	Neuron-Glia Interactions and Myelination in Health and Disease Number of participants limited to 15. The enrolment is done by the D-BIOL study administration.	W	6 credits	7G	U. Suter
Abstract	The course provides general basic insights and new perspectives in the development, plasticity and repair of the nervous system. The focus is on molecular, cellular and transgenic approaches.
Learning objective	Through a combination of practical work with lectures, discussions, project preparations and presentations, the students learns basic principles of neural plasticity and repair in health and disease. The course is closely linked to ongoing research projects in the lab to provide the participants with direct insights into current experimental approaches and strategies.
551-0118-00L	Cell Biology of Plant-Fungus Interaction Number of participants limited to 5. The enrolment is done by the D-BIOL study administration.	W	6 credits	7G	C. Sánchez-Rodríguez
Abstract	The course is a collaboration of the Plant Cell Biology groups of ETHZ and UZH. The students will learn key concepts related with the remarkable ability of plants to adapt to challenges provided by their environment (both biotic, such as pathogens, and abiotic, like nutrient deficiencies). A multidisciplinary approach including molecular genetics, cell biology, biochemistry and bioinformatics tool
Learning objective	In this course, students will get cell biological and molecular genetics insights into the developmental plasticity of plants to adapt to their environmental conditions using the model plant Arabidopsis thaliana. With this aim, they will actively participate in ongoing research projects tutored by doctoral students.
Content	Students will be engaged in research projects aimed to understand the specialized mechanisms evolved by the plants to grow under challenging environments. In a lecture series, the theoretical background for the projects and their interrelationship is provided. Students will design and perform experiments, evaluate experimental results, present their projects, and discuss recent publications to understand the relevance of their work in the context of the current state of plant development and stress response.
Lecture notes	No script
Literature	The recommended literature and list of individual reading assignments will be provided during the course
Prerequisites / Notice	All general lectures will be held at ETH Centrum (LFW building). Students will be divided into small groups to carry out experiments at ETH (Central; LFW) and UZH (Botanical Garden)

Block Courses in 2nd Quarter of the Semester From 12.3.2020 to 2.4.2020
Number	Title	Type	ECTS	Hours	Lecturers
376-1346-00L	Study of Epigenetic Mechanisms in Mental Health Number of participants limited to 12. The enrolment is done by the D-BIOL study administration.	W	6 credits	7G	I. Mansuy
Abstract	This block course is focused on the study of the epigenetic mechanisms that regulate complex brain functions and behavior. It provides an overview of molecular methods used in experimental mice or in human samples to investigate epigenetic processes that control genome activity and gene expression, and are associated with cognitive functions and behavioral responses.
Learning objective	The purpose is to learn the principles of major methods in epigenetics that allow examine genome activity at the level of DNA, RNA or protein, in the context of complex brain functions.
Content	4 independent projects for 3 students each covering various aspects of epigenetic mechanisms. It will focus on state-of-the-art techniques to measure or manipulate gene expression and gene activity in the adult brain or in cell culture, and analyse the effects in vitro or in vivo using omics analyses, molecular and biochemical tools and behavioral testing.
Lecture notes	Provided at the beginning of the practical.
551-0352-00L	Introduction to Mass Spectrometry-based Proteomics Number of participants limited to 12. The enrolment is done by the D-BIOL study administration.	W	6 credits	7G	L. Gillet, P. Picotti
Abstract	Protein Analysis by Mass Spectrometry The following topics will be covered: basics of biological mass spectrometry, including instrumentation, data collection and data analysis; applications to protein identification and characterization; sample preparation methods; proteomics strategies; and quantitative analysis.
Learning objective	How to prepare a protein sample for MS analysis (trypsin digestion, C18 clean-up) Principles of data acquisition LC-MS (QTOF and/or Ion Trap instruments) Perform qualitative proteomic analysis (protein identification with Mascot and/or Sequest Softwares) Perform quantitative proteomic analysis (label-free and labeled analyses) Analyze/interpret the data to find up/down regulated proteins
551-0434-00L	NMR Spectroscopy in Biology Number of participants limited to 6. The enrolment is done by the D-BIOL study administration.	W	6 credits	7G	F. Allain, A. D. Gossert, K. Wüthrich
Abstract	In this block course, students actively participate in ongoing research projects in the research groups of Profs. Allain, Wüthrich and Dr. Gossert. The students will be tutored in their experimental work by experienced postdoc students. In addition, the course includes specific lectures that provide the theoretical background for the experimental work, as well as exercises and literature work.
Learning objective	The course provides first "hands on" insight into applications of NMR spectroscopy in biological sciences. The course should enable the students to understand the potential and limitations of NMR applied to biological problems.
Content	The topics include studies of proteins, RNA and protein-RNA interactions, Participation in one of the following projects will be possible: - NMR of RNA - NMR of several protein-RNA complexes (hnRNPF, nPTB, SR proteins) - NMR studies of protein-ligand interactions - dynamics of protein-RNA complexes - Segmental isotopic labeling to study multidomain proteins - NMR Methods Development
Lecture notes	No script
Literature	Lists of individual reading assignments will be handed out.
529-0810-01L	Laboratory Course Organic Chemistry II (for D-BIOL) Number of participants limited to 12. Please contact Prof. C. Thilgen (thilgen@org.chem.ethz.ch) as early as possible, end of Autumn Semester. You will get a confirmation if you are accepted. The enrolment is done by the D-BIOL study administration. The de-facto language of instruction depends on the tutor.	W	12 credits	4P	C. Thilgen
Abstract	An organic-synthetic sub-project of the current research of a group from the Laboratory of Organic Chemistry is carried out under the guidance of doctoral students.
Learning objective	Learn to plan and carry out challenging multistep syntheses making use of modern methods; reach a deeper understanding of organic reactions through experimental work; develop an organic-synthetic research project; take accurate notes, write a publication style report, and present the obtained results in a seminar.
Content	An organic-synthetic sub-project of the current research of a group from the Laboratory of Organic Chemistry is carried out under the guidance of doctoral students.
Lecture notes	No course notes.
Literature	No set textbooks. Literature will be indicated or provided by the supervising TAs.
Prerequisites / Notice	Course prerequisites: Accomplished laboratory course Organic Chemistry I (529-0229-00) and passed session exam Organic Chemistry I (529-0221-00 or 529-1011-00) / Organic Chemistry II (529-0222-00 or 529-1012-00). The number of participants is limited to 12.
551-1147-00L	Bioactive Natural Products from Bacteria Number of participants limited to 7. The enrolment is done by the D-BIOL study administration.	W	6 credits	7G	J. Piel
Abstract	Lab course. In small groups projects of relevance to current research questions in the field of bacterial natural product biosynthesis are addressed.
Learning objective	Introduction to relevant subjects of the secondary metabolism of bacteria. Training in practical work in a research laboratory. Scientific writing in form of a research report.
Content	Research project on bacteria that produce bioactive natural products (e.g., Streptomycetes, Cyanobacteria, uncultivated bacteria). The techniques used will depend on the project, e.g. PCR, cloning, natural product analysis, precursor feeding studies, enzyme expression and analysis.
Lecture notes	none.
Literature	Will be provided for each of the projects at the beginning of the course.
551-1554-00L	Multigene Expression in Mammalian Cells Number of participants limited to 5. The enrolment is done by the D-BIOL study administration.	W	6 credits	7G	P. Berger, G. Schertler
Abstract	Genetic engineering of mammalian cells with multiple expression cassettes is an essential need in contemporary cell biology. It is useful for protein expression for structural studies, the reprogramming of somatic cells, or for the expression of several fluorescently-tagged sensors. In this course, we use MultiLabel (Kriz et al., Nat. Commun., 2010) to create multigene expression plasmids.
Learning objective	Students will learn to design and clone multigene expression constructs for mammalian cells. The functionality of the constructs will be tested by immunofluorescence microscopy or Western blotting.
Content	We will clone fluorescently-tagged markers for subcellular compartments, assemble them to a multigene expression construct and transfect them into mammalian cells. These markers of subcellular compartments will be used to study the trafficking of activated receptors (e.g. serotonin receptor). Pictures will be taken on our microscopes and then we will quantify colocalization.
Lecture notes	none
551-0436-00L	Cryo-electron Microscopic Studies of Ribosomal Complexes with Biomedically Important Viral mRNAs Number of participants limited to 15. The enrolment is done by the D-BIOL study administration.	W	6 credits	7G	N. Ban, D. Böhringer, M. A. Leibundgut
Abstract	Some viral mRNAs, such as from Hepatitis C virus, hijack cellular translational machinery by binding directly to the ribosome and circumventing the need for cellular initiation factors. They accomplish this through structured elements within the mRNAs called internal ribosome entry sites (IRESs). Participants of this course will visualize ribosomes in complex with viral IRESs at high resolution.
Learning objective	The goal of the course is to acquire the most important techniques and methods for the purification and structural characterisation of macromolecular complexes by transmission electron microscopy. The emphasis of the course is on the special practical requirements for the application of these techniques on macromolecular structures in the MDa range.
Content	Protein synthesis is a very energy intensive process that can consume over half the total metabolism of a cell. In eukaryotes, translation is therefore tightly regulated at the stage of initiation. Regulatory processes are much more complex at this step than in prokaryotes and a large number of RNA modification processes and translation initiation factors are required to ensure faithful initiation, elongation and termination of translation. Viral messenger RNAs are often produced by their own machinery, however, and need to be incorporated into the host translation machinery without the usual processing and therefore many viruses have developed strategies to circumvent the need for initiation factors. They accomplish this through highly structured elements within their RNA called internal ribosome entry sites (IRESs) that are able to initiate translation without the normal signals. Some viral IRESs, such as the IRESs from polio-virus or HIV, require most of the normal eIFs and even additional proteins. Others, such as the hepatitis C virus IRES, are able to bind directly to the ribosome and need only a few of the normal initiation factors. Within the Ban lab, we have studied, and continue to investigate, medically relevant viral IRESs. The course will involve producing, and attempting to determine the structures of, IRESs that have yet to have had their ribosome-bound structures resolved. A variety of purification techniques, including preparative gel electrophoresis and ultracentrifugation, will be used during the purification of macromolecular complexes. Purified assemblies will be then investigated functionally. Students will then characterise their samples structurally through transmission electron cryo-microscopy (cryo-EM), including sample preparation, microscopy, data evaluation and the calculation of densities. Finally, students will learn how to build and refine molecular models into parts of the calculated cryo-EM density. The participants will be working on a closed project related to current research within the laboratory and throughout the course the practical work will be accompanied by brief theoretical introductions. The principal aim of the course is to strengthen the skills required to independently conduct meaningful biophysical and biochemical experiments and to provide an early introduction into the structural characterisation of cellular macromolecular assemblies.
Lecture notes	A script will be distributed at the beginning of the course that will cover the experiments to be performed, provide references to the relevant literature and suggest points for further consideration for interested students.
Literature	Literature A basic overview is provided within the references below. Further reading and citations shall be detailed in the course script. - A. Fersht, Structure and mechanism in protein science, Freeman, 1999 (Chapters 1 and 6). - M. van Heel et al., Single-particle electron cryo microscopy: towards atomic resolution, Quart. Rev. Biophys. (33), 307-369 (2000).
Prerequisites / Notice	The course will be held in English. Students should have either completed courses: 551-0307-00L Biomolecular Structure and Mechanism I: Protein Structure and Function 551-0307-01L Biomolecular Structure and Mechanism II: Large Cellular Machines or equivalent courses covering the structure and function of biological macromolecules.

Block Courses in 3rd Quarter of the Semester From 3.4.2020 to 6.5.2020
Number	Title	Type	ECTS	Hours	Lecturers
551-0362-00L	Molecular Health: Biomedical Analysis of the Extracellular Interactome Number of participants limited to 12. The enrolment is done by the D-BIOL study administration.	W	6 credits	7G	B. Wollscheid, E. Tschudy-Milani
Abstract	In this course you will learn to measure, integrate, analyze and validate the cellular surfaceome as a complex information gateway connecting the intracellular to the extracellular interactome. You will apply next generation technologies at the interface of biology, chemistry, medicine and bioinformatics to establish the surfaceome proteotype and its signaling interaction networks.
Learning objective	"If a cell surface molecule such as the B cell receptor would have the size of a human being, then the cell surface of a B cell would have roughly the size of three times NYC Central Park." How many people/proteins/proteoforms reside in this space ("Surfaceome")? Similar to humans, proteins don't act alone. Function is encoded in dynamic protein-protein interactions. How are these proteoforms organized in signaling islands/networks in order to fulfill specific cellular functions ("Interactome")? What are the ligands interacting with the surfaceome to communicate information from other cells & tissues in the body? What goes wrong in these signaling islands if we get sick? In this course you will learn to measure, integrate, analyze and validate the cellular surfaceome and its signaling islands as a complex information gateway connecting the intracellular to the extracellular interactome. You will apply next generation technologies at the interface of biology, chemistry, medicine and bioinformatics to generate unprecedented data to establish the surfaceome proteotype and its signaling interaction networks. This digital proteotype data layer provides the basis for generating qualitative and quantitative surfaceome models explaining how molecular nanoscale organization influences cellular signaling and biological function.
Content	"If a cell surface molecule such as the B cell receptor would have the size of a human being, then the cell surface of a B cell would have roughly the size of three times NYC Central Park." How many people/proteins/proteoforms reside in this space ("Surfaceome")? Similar to humans, proteins don't act alone. Function is encoded in dynamic protein-protein interactions. How are these proteoforms organized in signaling islands/networks in order to fulfill specific cellular functions ("Interactome")? What are the ligands interacting with the surfaceome to communicate information from other cells & tissues in the body? What goes wrong in these signaling islands if we get sick? In this course you will learn to measure, integrate, analyze and validate the cellular surfaceome and its signaling islands as a complex information gateway connecting the intracellular to the extracellular interactome. You will apply next generation technologies at the interface of biology, chemistry, medicine and bioinformatics to generate unprecedented data to establish the surfaceome proteotype and its signaling interaction networks. This digital proteotype data layer provides the basis for generating qualitative and quantitative surfaceome models explaining how molecular nanoscale organization influences cellular signaling and biological function.
Literature	D. Bausch-Fluck, E. S. Milani, B. Wollscheid, Surfaceome nanoscale organization and extracellular interaction networks, Curr. Opin. Chem. Biol. 48, 26–33 (2019). https://paperpile.com/shared/ud6iWG
Prerequisites / Notice	This course requires a basic knowledge in mass spectrometry based proteomics and experience in computational data processing using R or MatLab. Ideally this course should be combined with course 551-0352-00L "Introduction to Mass Spectrometry-based Proteomics".

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